Bioinformatics 2013年4月12日文章列表

以下是《Bioinformatics》2013年4月12日文章列表,不过貌似需要Oxford Journals的权限才能下载到全文。

Original Papers
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
Jon Ison, Matúš Kalaš, Inge Jonassen, Dan Bolser, Mahmut Uludag, Hamish McWilliam, James Malone, Rodrigo Lopez, Steve Pettifer, and Peter Rice
Bioinformatics published 11 March 2013, 10.1093/bioinformatics/btt113

OKVAR-Boost: a novel boosting algorithm to infer nonlinear dynamics and interactions in gene regulatory networks
Néhémy Lim, Yasin Şenbabaoğlu, George Michailidis, and Florence d’Alché-Buc
Bioinformatics published 10 April 2013, 10.1093/bioinformatics/btt167

Parametric Bayesian priors and better choice of negative examples improve protein function prediction
Noah Youngs, Duncan Penfold-Brown, Kevin Drew, Dennis Shasha, and Richard Bonneau
Bioinformatics published 19 March 2013, 10.1093/bioinformatics/btt110

Poisson factor models with applications to non-normalized microRNA profiling
Seonjoo Lee, Pauline E. Chugh, Haipeng Shen, R. Eberle, and Dirk P. Dittmer
Bioinformatics published 21 February 2013, 10.1093/bioinformatics/btt091

Peakr: simulating solid-state NMR spectra of proteins
Robert Schneider, Florian Odronitz, Björn Hammesfahr, Marcel Hellkamp, and Martin Kollmar
Bioinformatics published 14 March 2013, 10.1093/bioinformatics/btt125

Sorad: a systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements
Tarmo Äijö, Kirsi Granberg, and Harri Lähdesmäki
Bioinformatics published 16 March 2013, 10.1093/bioinformatics/btt130

Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation
Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian Henderson, David Reich, Christopher Haiman, Esteban Gonzàlez Burchard, and Eran Halperin
Bioinformatics published 9 April 2013, 10.1093/bioinformatics/btt166

Measuring gene functional similarity based on group-wise comparison of GO terms
Zhixia Teng, Maozu Guo, Xiaoyan Liu, Qiguo Dai, Chunyu Wang, and Ping Xuan
Bioinformatics published 9 April 2013, 10.1093/bioinformatics/btt160

Programming strategy for efficient modeling of dynamics in a population of heterogeneous cells
Bjørn Olav Hald, Morten Garkier Hendriksen, and Preben Graae Sørensen
Bioinformatics published 16 March 2013, 10.1093/bioinformatics/btt132

Applications Note
SRV: an open-source toolbox to accelerate the recovery of metabolic biomarkers and correlations from metabolic phenotyping datasets
Vincent Navratil, Clément Pontoizeau, Elise Billoir, and Benjamin J. Blaise
Bioinformatics published 18 March 2013, 10.1093/bioinformatics/btt136

HAL: a hierarchical format for storing and analyzing multiple genome alignments
Glenn Hickey, Benedict Paten, Dent Earl, Daniel Zerbino, and David Haussler
Bioinformatics published 16 March 2013, 10.1093/bioinformatics/btt128

PHISTO: pathogen–host interaction search tool
Saliha Durmuş Tekir, Tunahan Çakır, Emre Ardıç, Ali Semih Sayılırbaş, Gökhan Konuk, Mithat Konuk, Hasret Sarıyer, Azat Uğurlu, İlknur Karadeniz, Arzucan Özgür, Fatih Erdoğan Sevilgen, and Kutlu Ö. Ülgen
Bioinformatics published 20 March 2013, 10.1093/bioinformatics/btt137

biographer: web based editing and rendering of SBGN compliant biochemical networks
Falko Krause, Marvin Schulz, Ben Ripkens, Max Flöttmann, Marcus Krantz, Edda Klipp, and Thomas Handorf
Bioinformatics published 10 April 2013, 10.1093/bioinformatics/btt159
[Abstract] [PDF] Creative Commons License OPEN ACCESS

DP2: Distributed 3D Image Segmentation Using Micro-labor Workforce
Richard J. Giuly, Keun-Young Kim, and Mark H. Ellisman
Bioinformatics published 10 April 2013, 10.1093/bioinformatics/btt154

pfsearchV3: a code acceleration and heuristic to search PROSITE profiles
Thierry Schuepbach, Marco Pagni, Alan Bridge, Lydie Bougueleret, Ioannis Xenarios, and Lorenzo Cerutti
Bioinformatics published 16 March 2013, 10.1093/bioinformatics/btt129

Retraction
Retraction:
Bioinformatics published 2 February 2012, 10.1093/bioinformatics/bts067

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